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From: Pietro Pugni <pietro.pugni@gmail.com>
To: pgsql-performance@postgresql.org <pgsql-performance@postgresql.org>
Subject: Postgres not using all RAM (Huge Page activated on a 96GB RAM system)
Date: Fri, 24 Mar 2017 10:58:08 +0100
Message-ID: <C1D938B1-C137-44A7-AC46-C0F5C6725785@gmail.com> (raw)
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Hi there,
I’m running PostgreSQL 9.6.2 on Ubuntu 16.04.2 TLS (kernel 4.4.0-66-generic). Hardware is:
 - 2 x Intel Xeon E5-2690
 - 96GB RAM
 - Software mdadm RAID10 (6 x SSDs)

Postgres is used in a sort of DWH application, so all the resources are assigned to it and the aim is to maximize the single transaction performance instead of balancing between multiple connections.

The configuration variables I changed are the following ones:

	checkpoint_completion_target = 0.9
	data_directory = '/mnt/raid10/pg_data_9.6.2'
	default_statistics_target = 1000
	effective_cache_size = 72GB
	effective_io_concurrency = 1000
	listen_addresses = '127.0.0.1,192.168.2.90'
	maintenance_work_mem = 1GB
	max_connections=32
	random_page_cost=1.2
	seq_page_cost=1.0
	shared_buffers = 24GB
	work_mem = 512MB


The kernel configuration in /etc/sysctl.conf is:

	# 24GB = (24*1024*1024*1024)
	kernel.shmmax = 25769803776

	# 6MB = (24GB/4096) dove 4096 e' uguale a "getconf PAGE_SIZE"
	kernel.shmall = 6291456

	kernel.sched_migration_cost_ns = 5000000
	kernel.sched_autogroup_enabled = 0

	vm.overcommit_memory = 2
	vm.overcommit_ratio = 90
	vm.swappiness = 4
	vm.zone_reclaim_mode = 0
	vm.dirty_ratio = 15
	vm.dirty_background_ratio = 3
	vm.nr_hugepages = 12657
	vm.min_free_kbytes=262144

	dev.raid.speed_limit_max=1000000
	dev.raid.speed_limit_min=1000000


Huge pages are being used on this machine and Postgres allocates 24GB immediately after starting up, as set by vm.nr_hugepages = 12657.
My concern is that it never uses more than 24GB. For example, I’m running 16 queries that use a lot of CPU (they do time series expansion and some arithmetics). I estimate they will generate a maximum of 2.5 billions of rows. Those queries are running since 48 hours and don’t know when they will finish, but RAM never overpassed those 24GB (+ some system). 

Output from free -ht:
              total        used        free      shared  buff/cache   available
Mem:            94G         28G         46G         17M         19G         64G
Swap:           15G          0B         15G
Total:         109G         28G         61G

Output from vmstat -S M:
procs -----------memory---------- ---swap-- -----io---- -system-- ------cpu-----
 r  b   swpd   free   buff  cache   si   so    bi    bo   in   cs us sy id wa st
17  0      0  47308    197  19684    0    0     4    12    3    8 96  0  3  0  0


Output from top -U postgres:
top - 10:54:19 up 2 days,  1:37,  1 user,  load average: 16.00, 16.00, 16.00
Tasks: 347 total,  17 running, 330 sleeping,   0 stopped,   0 zombie
%Cpu(s):100.0 us,  0.0 sy,  0.0 ni,  0.0 id,  0.0 wa,  0.0 hi,  0.0 si,  0.0 st
KiB Mem : 98847584 total, 48442364 free, 30046352 used, 20358872 buff/cache
KiB Swap: 15825916 total, 15825916 free,        0 used. 67547664 avail Mem 

  PID USER      PR  NI    VIRT    RES    SHR S  %CPU %MEM     TIME+ COMMAND                                                                                                                                                          
 9686 postgres  20   0 24.918g 214236  12628 R 100.0  0.2   2872:38 postgres                                                                                                                                                        
 9687 postgres  20   0 24.918g 214212  12600 R 100.0  0.2   2872:27 postgres                                                                                                                                                        
 9688 postgres  20   0 25.391g 709936  12708 R 100.0  0.7   2872:40 postgres                                                                                                                                                        
 9691 postgres  20   0 24.918g 214516  12900 R 100.0  0.2   2865:23 postgres                                                                                                                                                        
 9697 postgres  20   0 24.918g 214284  12676 R 100.0  0.2   2866:05 postgres                                                                                                                                                        
 9698 postgres  20   0 24.922g 218608  12904 R 100.0  0.2   2872:31 postgres                                                                                                                                                        
 9699 postgres  20   0 24.918g 214512  12904 R 100.0  0.2   2865:32 postgres                                                                                                                                                        
 9702 postgres  20   0 24.922g 218332  12628 R 100.0  0.2   2865:24 postgres                                                                                                                                                        
 9704 postgres  20   0 24.918g 214512  12904 R 100.0  0.2   2872:50 postgres                                                                                                                                                        
 9710 postgres  20   0 24.918g 212364  12904 R 100.0  0.2   2865:38 postgres                                                                                                                                                        
 9681 postgres  20   0 24.918g 212300  12596 R  99.7  0.2   2865:18 postgres                                                                                                                                                        
 9682 postgres  20   0 24.918g 212108  12656 R  99.7  0.2   2872:34 postgres                                                                                                                                                        
 9684 postgres  20   0 24.918g 212612  12908 R  99.7  0.2   2872:24 postgres                                                                                                                                                        
 9685 postgres  20   0 24.918g 214208  12600 R  99.7  0.2   2872:47 postgres                                                                                                                                                        
 9709 postgres  20   0 24.918g 214284  12672 R  99.7  0.2   2866:03 postgres                                                                                                                                                        
 9693 postgres  20   0 24.918g 214300  12688 R  99.3  0.2   2865:59 postgres                                                                                                                                                        
 9063 postgres  20   0 24.722g  14812  12956 S   0.3  0.0   0:07.36 postgres                                                                                                                                                        
 9068 postgres  20   0 24.722g   6380   4232 S   0.3  0.0   0:02.15 postgres                                                                                                                                                        
 9065 postgres  20   0 24.727g  10368   3516 S   0.0  0.0   0:04.24 postgres                                                                                                                                                        
 9066 postgres  20   0 24.722g   4100   2248 S   0.0  0.0   0:06.04 postgres                                                                                                                                                        
 9067 postgres  20   0 24.722g   4100   2248 S   0.0  0.0   0:01.37 postgres                                                                                                                                                        
 9069 postgres  20   0  161740   4596   2312 S   0.0  0.0   0:04.48 postgres  

What’s wrong with this? There isn’t something wrong in RAM usage?

Thank you all
   Pietro =

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  Subject: Re: Postgres not using all RAM (Huge Page activated on a 96GB RAM system)
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